========================================== mpa.ScanModel ========================================== **Overview** The scan model class can scan a model over all sequences embedde within larger contigs. **Usage** >>> import mpathic as mpa >>> model = mpa.io.load_model("./mpathic/data/sortseq/full-0/crp_model.txt") >>> fastafile = "./mpathic/examples/genome_ecoli_1000lines.fa" >>> contig = mpa.io.load_contigs_from_fasta(fastafile,model) >>> mpa.ScanModel(model_df = model, contig_list = contig) **Example Output Table**:: val seq left right ori contig 0 2.040628 GGTCGTTTGCCTGCGCCGTGCA 11710 11731 + MG1655.fa 1 2.006080 GGAAGTCGCCGCCCGCACCGCT 74727 74748 - MG1655.fa 2 1.996992 TGGGTGTGGCGCGTGACCTGTT 45329 45350 + MG1655.fa 3 1.920821 GGTATGTGTCGCCAGCCAGGCA 38203 38224 + MG1655.fa 4 1.879852 GGTGATTTTGGCGTGGTGGCGT 73077 73098 - MG1655.fa 5 1.866188 GTTCTTTTCCGCGGGCTGGGAT 35967 35988 - MG1655.fa ... Class Details ------------- .. autoclass:: scan_model.ScanModel :members: